7G69
Crystal Structure of rat Autotaxin in complex with N-(3,5-dimethoxyphenyl)-[1,2,4]triazolo[4,3-a]quinoxalin-4-amine, i.e. SMILES C12=NN=CN1c1c(N=C2Nc2cc(cc(c2)OC)OC)cccc1 with IC50=2.67272 microM
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SLS BEAMLINE X10SA |
| Synchrotron site | SLS |
| Beamline | X10SA |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2013-09-11 |
| Detector | PSI PILATUS 6M |
| Wavelength(s) | 0.999980 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 84.160, 91.840, 119.512 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 45.920 - 1.610 |
| R-factor | 0.1861 |
| Rwork | 0.185 |
| R-free | 0.21510 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | inhouse model |
| RMSD bond length | 0.014 |
| RMSD bond angle | 1.624 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0048) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 45.920 | 45.920 | 1.650 |
| High resolution limit [Å] | 1.610 | 7.200 | 1.610 |
| Rmerge | 0.094 | 0.023 | 2.283 |
| Rmeas | 0.102 | 0.025 | 2.488 |
| Total number of observations | 795582 | ||
| Number of reflections | 120202 | 1515 | 8818 |
| <I/σ(I)> | 13.06 | 53.63 | 0.88 |
| Completeness [%] | 99.9 | 99.3 | 100 |
| Redundancy | 6.619 | 6.223 | 6.33 |
| CC(1/2) | 0.999 | 1.000 | 0.301 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 293 | 15.3 mg/mL protein in 20mM BICINE/NaOH pH8.5, 150mM NaCl, 0.02% NaN3 mixed 50-70% with 50-30% reservoir consisting of 11-17% PEG3350, 0.1M Na-acetate pH4.5, 0.2M Ca-acetate, total volume 200nL |






