7G67
Crystal Structure of rat Autotaxin in complex with 3-(1-acetylpiperidin-4-yl)-4-[(E)-(4-chlorophenyl)diazenyl]-1,4-dihydropyrazol-5-one
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-09-11 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.999980 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 84.629, 92.367, 120.587 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.110 - 1.970 |
R-factor | 0.2028 |
Rwork | 0.201 |
R-free | 0.23920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | inhouse model |
RMSD bond length | 0.009 |
RMSD bond angle | 1.307 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0048) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.110 | 49.110 | 2.020 |
High resolution limit [Å] | 1.970 | 8.810 | 1.970 |
Rmerge | 0.100 | 0.035 | 1.945 |
Rmeas | 0.109 | 0.039 | 2.114 |
Total number of observations | 442861 | ||
Number of reflections | 67476 | 867 | 4909 |
<I/σ(I)> | 11.76 | 35.44 | 1.12 |
Completeness [%] | 99.9 | 98.5 | 100 |
Redundancy | 6.563 | 5.685 | 6.546 |
CC(1/2) | 0.998 | 0.999 | 0.420 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 293 | 15.3 mg/mL protein in 20mM BICINE/NaOH pH8.5, 150mM NaCl, 0.02% NaN3 mixed 50-70% with 50-30% reservoir consisting of 11-17% PEG3350, 0.1M Na-acetate pH4.5, 0.2M Ca-acetate, total volume 200nL |