7G67
Crystal Structure of rat Autotaxin in complex with 3-(1-acetylpiperidin-4-yl)-4-[(E)-(4-chlorophenyl)diazenyl]-1,4-dihydropyrazol-5-one
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SLS BEAMLINE X10SA |
| Synchrotron site | SLS |
| Beamline | X10SA |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2013-09-11 |
| Detector | PSI PILATUS 6M |
| Wavelength(s) | 0.999980 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 84.629, 92.367, 120.587 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 49.110 - 1.970 |
| R-factor | 0.2028 |
| Rwork | 0.201 |
| R-free | 0.23920 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | inhouse model |
| RMSD bond length | 0.009 |
| RMSD bond angle | 1.307 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0048) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 49.110 | 49.110 | 2.020 |
| High resolution limit [Å] | 1.970 | 8.810 | 1.970 |
| Rmerge | 0.100 | 0.035 | 1.945 |
| Rmeas | 0.109 | 0.039 | 2.114 |
| Total number of observations | 442861 | ||
| Number of reflections | 67476 | 867 | 4909 |
| <I/σ(I)> | 11.76 | 35.44 | 1.12 |
| Completeness [%] | 99.9 | 98.5 | 100 |
| Redundancy | 6.563 | 5.685 | 6.546 |
| CC(1/2) | 0.998 | 0.999 | 0.420 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 293 | 15.3 mg/mL protein in 20mM BICINE/NaOH pH8.5, 150mM NaCl, 0.02% NaN3 mixed 50-70% with 50-30% reservoir consisting of 11-17% PEG3350, 0.1M Na-acetate pH4.5, 0.2M Ca-acetate, total volume 200nL |






