7G5A
Crystal Structure of rat Autotaxin in complex with 2-tert-butyl-6-(4-chlorophenyl)-4-methylsulfonylpyridine, i.e. SMILES c1(c2ccc(cc2)Cl)cc(cc(n1)C(C)(C)C)S(=O)(=O)C with IC50=2.51866 microM
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SLS BEAMLINE X10SA |
| Synchrotron site | SLS |
| Beamline | X10SA |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2013-03-04 |
| Detector | PSI PILATUS 6M |
| Wavelength(s) | 0.999970 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 83.923, 91.947, 119.155 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 48.580 - 1.670 |
| R-factor | 0.188 |
| Rwork | 0.186 |
| R-free | 0.22220 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | inhouse model |
| RMSD bond length | 0.018 |
| RMSD bond angle | 1.813 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 48.580 | 48.580 | 1.710 |
| High resolution limit [Å] | 1.670 | 7.470 | 1.670 |
| Rmerge | 0.127 | 0.033 | 1.303 |
| Rmeas | 0.138 | 0.037 | 1.411 |
| Total number of observations | 711692 | ||
| Number of reflections | 107382 | 1358 | 7849 |
| <I/σ(I)> | 12.55 | 40.74 | 1.8 |
| Completeness [%] | 100.0 | 99.2 | 99.9 |
| Redundancy | 6.628 | 6.057 | 6.761 |
| CC(1/2) | 0.998 | 0.999 | 0.596 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 293 | 15.3 mg/mL protein in 20mM BICINE/NaOH pH8.5, 150mM NaCl, 0.02% NaN3 mixed 50-70% with 50-30% reservoir consisting of 11-17% PEG3350, 0.1M Na-acetate pH4.5, 0.2M Ca-acetate, total volume 200nL |






