7G45
Crystal Structure of rat Autotaxin in complex with 3-(4-chloro-5-methyl-2-propan-2-ylphenyl)-4-methyl-1H-1,2,4-triazol-5-one, i.e. SMILES c1c(c(cc(c1C(C)C)C1=NNC(=O)N1C)C)Cl with IC50=0.843581 microM
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SLS BEAMLINE X10SA |
| Synchrotron site | SLS |
| Beamline | X10SA |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2013-02-09 |
| Detector | PSI PILATUS 6M |
| Wavelength(s) | 1.000010 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 83.998, 91.473, 119.855 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 48.780 - 1.800 |
| R-factor | 0.2397 |
| Rwork | 0.238 |
| R-free | 0.27060 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | inhouse model |
| RMSD bond length | 0.008 |
| RMSD bond angle | 1.266 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 48.780 | 48.780 | 1.850 |
| High resolution limit [Å] | 1.800 | 8.060 | 1.800 |
| Rmerge | 0.172 | 0.038 | 1.368 |
| Rmeas | 0.188 | 0.042 | 1.669 |
| Total number of observations | 513377 | ||
| Number of reflections | 84778 | 1095 | 5359 |
| <I/σ(I)> | 11.87 | 41.88 | 1.03 |
| Completeness [%] | 98.8 | 99.1 | 85.3 |
| Redundancy | 6.056 | 5.789 | 2.781 |
| CC(1/2) | 0.996 | 0.999 | 0.217 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 293 | 15.3 mg/mL protein in 20mM BICINE/NaOH pH8.5, 150mM NaCl, 0.02% NaN3 mixed 50-70% with 50-30% reservoir consisting of 11-17% PEG3350, 0.1M Na-acetate pH4.5, 0.2M Ca-acetate, total volume 200nL |






