7G42

Crystal Structure of rat Autotaxin in complex with 4-[[6-chloro-2-[3-(1H-imidazol-5-yl)propanoyl]-3,4-dihydro-1H-pyrido[3,4-b]indol-9-yl]methyl]benzonitrile, i.e. SMILES C12=C(CN(CC1)C(=O)CCC1=CN=CN1)N(c1c2cc(cc1)Cl)Cc1ccc(cc1)C#N with IC50=1.37998 microM

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	SLS BEAMLINE X10SA
Synchrotron site	SLS
Beamline	X10SA
Temperature [K]	100
Detector technology	PIXEL
Collection date	2012-11-12
Detector	PSI PILATUS 6M
Wavelength(s)	0.999980
Spacegroup name	P 21 21 21
Unit cell lengths	83.551, 91.399, 118.762
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	45.700 - 2.070
R-factor	0.1873
Rwork	0.185
R-free	0.23210
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	inhouse model
RMSD bond length	0.013
RMSD bond angle	1.612
Data reduction software	XDS
Data scaling software	XSCALE
Phasing software	PHASER
Refinement software	REFMAC (5.7.0029)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	45.700	45.700	2.120
High resolution limit [Å]	2.070	9.260	2.070
Rmerge	0.142	0.057	1.438
Rmeas	0.154	0.062	1.566
Total number of observations	370719
Number of reflections	56130	725	4084
<I/σ(I)>	8.85	26.19	1.41
Completeness [%]	99.9	98.6	99.9
Redundancy	6.605	5.945	6.379
CC(1/2)	0.996	0.996	0.512

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	4.5	293	15.3 mg/mL protein in 20mM BICINE/NaOH pH8.5, 150mM NaCl, 0.02% NaN3 mixed 50-70% with 50-30% reservoir consisting of 11-17% PEG3350, 0.1M Na-acetate pH4.5, 0.2M Ca-acetate, total volume 200nL