7FTX
Crystal Structure of apo human cyclic GMP-AMP synthase - hexagonal form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-13 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 101.235, 101.235, 240.332 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 82.360 - 2.831 |
R-factor | 0.2446 |
Rwork | 0.243 |
R-free | 0.27800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | inhouse model |
RMSD bond length | 0.007 |
RMSD bond angle | 0.870 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | BUSTER (2.11.8 (21-NOV-2022)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 82.360 | 82.360 | 3.120 |
High resolution limit [Å] | 3.040 | 13.600 | 3.040 |
Rmerge | 0.390 | 0.039 | 3.756 |
Rmeas | 0.401 | 0.041 | 3.857 |
Total number of observations | 279829 | ||
Number of reflections | 14825 | 232 | 1057 |
<I/σ(I)> | 10.71 | 46.7 | 1.09 |
Completeness [%] | 99.9 | 98.7 | 100 |
Redundancy | 18.875 | 14.685 | 19.264 |
CC(1/2) | 0.996 | 1.000 | 0.412 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 10-12 mg/mL protein in 25 mM Tris/HCl pH7.5, 500mM NaCl, 2mM TCEP, supplemented with 10x molar excess of ligand and, if needed, with 10 mM MgCl2 and 5mM ATP, then mixed 1:1 with reservoir of the Procomplex screen. Several conditions resulted in crystals. |