7FTJ
Crystal Structure of apo human cyclic GMP-AMP synthase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-02-05 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.999940 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 47.886, 57.293, 122.106 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 57.293 - 1.461 |
R-factor | 0.1915 |
Rwork | 0.191 |
R-free | 0.21010 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | inhouse model |
RMSD bond length | 0.009 |
RMSD bond angle | 0.810 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.12rc1_2801) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 57.290 | 57.293 | 1.500 |
High resolution limit [Å] | 1.460 | 6.530 | 1.460 |
Rmerge | 0.050 | 0.026 | 2.064 |
Rmeas | 0.054 | 0.028 | 2.226 |
Total number of observations | 419901 | ||
Number of reflections | 59097 | 778 | 4283 |
<I/σ(I)> | 16.54 | 54.84 | 0.93 |
Completeness [%] | 99.9 | 99.5 | 99.9 |
Redundancy | 7.105 | 6.422 | 7.003 |
CC(1/2) | 0.999 | 0.999 | 0.358 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 10-12 mg/mL protein in 25 mM Tris/HCl pH7.5, 500mM NaCl, 2mM TCEP, supplemented with 10x molar excess of ligand and, if needed, with 10 mM MgCl2 and 5mM ATP, then mixed 1:1 with reservoir of the Procomplex screen. Several conditions resulted in crystals. |