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7FS2

Structure of liver pyruvate kinase in complex with allosteric modulator 13

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2021-10-15
DetectorDECTRIS EIGER2 X 16M
Wavelength(s)0.9795
Spacegroup nameC 1 2 1
Unit cell lengths207.669, 113.013, 187.767
Unit cell angles90.00, 92.41, 90.00
Refinement procedure
Resolution187.600 - 2.374
R-factor0.2051
Rwork0.203
R-free0.23950
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008
RMSD bond angle0.910
Data reduction softwareXDS
Data scaling softwareSTARANISO
Phasing softwarePHASER
Refinement softwareBUSTER (2.10.4 (16-JUL-2021))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]103.743103.7432.599
High resolution limit [Å]2.3747.4052.374
Rmerge0.2160.0511.866
Rpim0.0660.0160.565
Total number of observations1377909
Number of reflections11848759225925
<I/σ(I)>9.226.81.5
Completeness [%]92.7
Redundancy11.611.511.8
CC(1/2)0.9980.9990.580
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5291100 mM HEPES/MOPS, 10% PEG8000, 20% ethylene glycol, 10 mM phenylalanine, 20 mM sodium oxalate

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PDB entries from 2024-05-15

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