7FDY
Structure of OmpF1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2022-07-08 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.97919 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 128.600, 140.390, 110.860 |
Unit cell angles | 90.00, 120.01, 90.00 |
Refinement procedure
Resolution | 29.128 - 3.100 |
R-factor | 0.2706 |
Rwork | 0.269 |
R-free | 0.29480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2omf |
Data reduction software | HKL-2000 |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.128 | 29.128 | 3.280 |
High resolution limit [Å] | 3.100 | 8.900 | 3.100 |
Rmerge | 0.109 | 0.029 | 0.777 |
Rmeas | 0.127 | 0.034 | 0.908 |
Total number of observations | 226132 | ||
Number of reflections | 60349 | 2445 | 9678 |
<I/σ(I)> | 10.33 | 35.31 | 1.55 |
Completeness [%] | 98.3 | 93.5 | 98.1 |
Redundancy | 3.747 | 3.333 | 3.72 |
CC(1/2) | 0.997 | 0.998 | 0.839 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 298 | 0.1 mM sodium cacodylate (pH 8.0), 43% PEG 200, 0.12 M MgCl2 |