Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7F7R

Enterococcus faecalis GH31 alpha-N-acetylgalactosaminidase D455N in complex with Tn antigen

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE AR-NW12A
Synchrotron sitePhoton Factory
BeamlineAR-NW12A
Temperature [K]100
Detector technologyPIXEL
Collection date2020-11-14
DetectorDECTRIS PILATUS3 S 2M
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths82.706, 82.973, 148.580
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.040 - 1.630
Rwork0.177
R-free0.20040
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6m76
RMSD bond length0.011
RMSD bond angle1.629
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0267)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.720
High resolution limit [Å]1.6301.630
Rmerge0.0680.961
Rmeas0.070
Rpim0.0190.287
Number of reflections12795118495
<I/σ(I)>23.82.6
Completeness [%]100.0100
Redundancy13.112.1
CC(1/2)1.0000.809
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29325% PEG3350, 0.2 M ammonium citrate

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon