7F3L

Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P62

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	SSRF BEAMLINE BL18U1
Synchrotron site	SSRF
Beamline	BL18U1
Temperature [K]	100
Detector technology	PIXEL
Collection date	2020-01-03
Detector	DECTRIS PILATUS 6M
Wavelength(s)	0.97915
Spacegroup name	P 62
Unit cell lengths	67.275, 67.275, 32.628
Unit cell angles	90.00, 90.00, 120.00

Refinement procedure

Resolution	29.130 - 1.880
R-factor	0.1984
Rwork	0.195
R-free	0.23150
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	6a6l
RMSD bond length	0.008
RMSD bond angle	1.232
Data reduction software	HKL-3000
Data scaling software	HKL-3000
Phasing software	PHENIX
Refinement software	PHENIX (1.18.2_3874)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	30.000	1.910
High resolution limit [Å]	1.880	1.880
Rmerge	0.076	0.414
Number of reflections	6974	365
<I/σ(I)>	34.8	4.3
Completeness [%]	99.9
Redundancy	14.5

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP		290	2.1 M Ammonium sulfate