7F14
Crystal structure of isomerase Dcr3 complex with substrate analogue 3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-06-26 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.1 |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 104.094, 104.094, 138.681 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.730 - 2.400 |
R-factor | 0.2117 |
Rwork | 0.207 |
R-free | 0.24890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7f0o |
RMSD bond length | 0.008 |
RMSD bond angle | 1.018 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.730 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.077 | 0.682 |
Number of reflections | 17929 | 1830 |
<I/σ(I)> | 25.7 | 4.7 |
Completeness [%] | 99.8 | 99.6 |
Redundancy | 19.9 | 20.5 |
CC(1/2) | 0.999 | 0.940 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 100 mM Tris-HCl (pH8.5), 15% w/v PEG8000, 250 mM KF |