7EYU
Fe(II)/(alpha)ketoglutarate-dependent dioxygenase SptF-N65T mutant with andiconin D
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-27 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 |
Unit cell lengths | 42.813, 50.583, 71.982 |
Unit cell angles | 109.11, 91.29, 112.86 |
Refinement procedure
Resolution | 27.850 - 2.050 |
R-factor | 0.2433 |
Rwork | 0.241 |
R-free | 0.27800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7eyr |
RMSD bond length | 0.003 |
RMSD bond angle | 0.633 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.600 | 2.110 |
High resolution limit [Å] | 2.050 | 2.050 |
Rmerge | 0.176 | 0.455 |
Number of reflections | 31258 | 2440 |
<I/σ(I)> | 7.1 | 3.5 |
Completeness [%] | 96.2 | 95.7 |
Redundancy | 4.2 | 4.2 |
CC(1/2) | 0.971 | 0.893 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 283 | 0.2 M magnesium formate dehydrate, 20% w/v PEG 3350 |