7EX4
Crystal structure of Ebinur Lake virus cap snatching endonuclease in complex with inhibitor 5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-01-15 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.933, 70.566, 70.882 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.410 - 2.000 |
R-factor | 0.2067 |
Rwork | 0.205 |
R-free | 0.23620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xi5 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19_4080) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.070 |
High resolution limit [Å] | 2.000 | 4.310 | 2.000 |
Rmerge | 0.105 | 0.078 | 0.344 |
Rmeas | 0.127 | 0.097 | 0.403 |
Rpim | 0.071 | 0.056 | 0.206 |
Total number of observations | 39371 | ||
Number of reflections | 12910 | 1329 | 1162 |
<I/σ(I)> | 10 | ||
Completeness [%] | 88.5 | 84 | 84.1 |
Redundancy | 3 | 2.8 | 3.4 |
CC(1/2) | 0.993 | 0.851 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 5.1 | 289 | PEG 3350 |