7EX0
Crystal structure of Ebinur Lake virus cap snatching endonuclease (K108A mutant)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-08 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 69.808, 41.452, 85.766 |
Unit cell angles | 90.00, 104.72, 90.00 |
Refinement procedure
Resolution | 30.210 - 2.070 |
R-factor | 0.2042 |
Rwork | 0.203 |
R-free | 0.23020 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2xi5 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19_4080) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.140 |
High resolution limit [Å] | 2.070 | 4.460 | 2.070 |
Rmerge | 0.040 | 0.021 | 0.455 |
Rmeas | 0.047 | 0.025 | 0.533 |
Rpim | 0.024 | 0.013 | 0.273 |
Total number of observations | 104989 | ||
Number of reflections | 29345 | 3037 | 2861 |
<I/σ(I)> | 15.3 | ||
Completeness [%] | 99.8 | 98.9 | 99.7 |
Redundancy | 3.6 | 3.4 | 3.6 |
CC(1/2) | 0.999 | 0.837 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 5.1 | 289 | PEG 3350 |