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7ER1

Crystal structure of capsid P domain of norovirus GI.3 VA115 complexed with Gala1-3Galb1-4Glc

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyCCD
Collection date2021-02-09
DetectorRIGAKU SATURN 944
Wavelength(s)1.5418
Spacegroup nameP 1
Unit cell lengths57.290, 59.637, 91.419
Unit cell angles102.28, 96.72, 109.77
Refinement procedure
Resolution41.290 - 2.200
R-factor0.1802
Rwork0.178
R-free0.21980
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7er0
RMSD bond length0.005
RMSD bond angle1.321
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.240
High resolution limit [Å]2.2005.9702.200
Rmerge0.0810.0470.161
Rmeas0.0920.0530.186
Rpim0.0420.0240.091
Total number of observations236380
Number of reflections5201327131999
<I/σ(I)>11
Completeness [%]94.59973.4
Redundancy4.54.83.6
CC(1/2)0.9970.978
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.42930.2M Sodium formate pH 6.4, 17% (w/v) Polyethylene glycol 3350

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