7EQR
Crystal structure of Truncated (Delta 1-19) Chitoporin VhChiP from Vibrio harveyi in complex with chitohexaose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSRRC BEAMLINE TPS 05A |
Synchrotron site | NSRRC |
Beamline | TPS 05A |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 2020-08-17 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.9 |
Spacegroup name | P 1 |
Unit cell lengths | 58.000, 131.226, 136.586 |
Unit cell angles | 65.80, 87.83, 86.90 |
Refinement procedure
Resolution | 19.891 - 2.750 |
R-factor | 0.182204428945 |
Rwork | 0.180 |
R-free | 0.22275 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5mdo |
RMSD bond length | 0.009 |
RMSD bond angle | 1.042 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 20.000 | 2.750 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.169 | |
Rmeas | 0.188 | |
Rpim | 0.081 | 0.030 |
Number of reflections | 98809 | 98809 |
<I/σ(I)> | 37.7 | |
Completeness [%] | 100.0 | |
Redundancy | 5.1 | |
CC(1/2) | 0.750 | 0.996 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9.8 | 292 | 10 mM GlcNAc6 , 0.125 M Lithium nitrate, 0.1 M Glycine pH 9.8, 45 % v/v PEG 400 |