7EOP
Crystal structure of the Pepper aptamer in complex with HBC620
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-05 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.102 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 92.447, 34.983, 57.839 |
Unit cell angles | 90.00, 127.57, 90.00 |
Refinement procedure
Resolution | 28.914 - 1.800 |
R-factor | 0.1911 |
Rwork | 0.190 |
R-free | 0.21130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7eog |
Data reduction software | HKL-3000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.860 |
High resolution limit [Å] | 1.800 | 3.880 | 1.800 |
Rmerge | 0.088 | 0.041 | 0.640 |
Rmeas | 0.096 | 0.044 | 0.703 |
Rpim | 0.037 | 0.017 | 0.285 |
Total number of observations | 89200 | ||
Number of reflections | 13710 | 1427 | 1333 |
<I/σ(I)> | 3.7 | ||
Completeness [%] | 99.1 | 99.4 | 97.4 |
Redundancy | 6.5 | 6.5 | 5.8 |
CC(1/2) | 0.998 | 0.816 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 0.1 M ammonium chloride, 0.005 M magnesium chloride, 0.025 M HEPES, pH 7.0, 1.25 M 1,6-hexanediol, 40% MPD |