7EOP
Crystal structure of the Pepper aptamer in complex with HBC620
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRF BEAMLINE BL19U1 |
| Synchrotron site | SSRF |
| Beamline | BL19U1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-05-05 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 1.102 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 92.447, 34.983, 57.839 |
| Unit cell angles | 90.00, 127.57, 90.00 |
Refinement procedure
| Resolution | 28.914 - 1.800 |
| R-factor | 0.1911 |
| Rwork | 0.190 |
| R-free | 0.21130 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 7eog |
| Data reduction software | HKL-3000 |
| Data scaling software | HKL-2000 |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.000 | 50.000 | 1.860 |
| High resolution limit [Å] | 1.800 | 3.880 | 1.800 |
| Rmerge | 0.088 | 0.041 | 0.640 |
| Rmeas | 0.096 | 0.044 | 0.703 |
| Rpim | 0.037 | 0.017 | 0.285 |
| Total number of observations | 89200 | ||
| Number of reflections | 13710 | 1427 | 1333 |
| <I/σ(I)> | 3.7 | ||
| Completeness [%] | 99.1 | 99.4 | 97.4 |
| Redundancy | 6.5 | 6.5 | 5.8 |
| CC(1/2) | 0.998 | 0.816 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 289 | 0.1 M ammonium chloride, 0.005 M magnesium chloride, 0.025 M HEPES, pH 7.0, 1.25 M 1,6-hexanediol, 40% MPD |






