7EO6
X-ray structure analysis of xylanase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-11-16 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 |
Unit cell lengths | 35.800, 42.476, 59.734 |
Unit cell angles | 74.32, 87.40, 86.11 |
Refinement procedure
Resolution | 30.720 - 1.900 |
R-factor | 0.193 |
Rwork | 0.192 |
R-free | 0.21640 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1m4w |
Data reduction software | iMOSFLM |
Data scaling software | Aimless (0.7.4) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.520 | 38.520 | 1.940 |
High resolution limit [Å] | 1.900 | 9.110 | 1.900 |
Rmerge | 0.103 | 0.080 | 0.210 |
Rmeas | 0.125 | 0.098 | 0.262 |
Rpim | 0.070 | 0.055 | 0.154 |
Total number of observations | 82664 | 837 | 4752 |
Number of reflections | 25769 | 232 | 1645 |
<I/σ(I)> | 7.5 | 12.2 | 4.3 |
Completeness [%] | 96.7 | 96.7 | 95.3 |
Redundancy | 3.2 | 3.6 | 2.9 |
CC(1/2) | 0.969 | 0.919 | 0.760 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 291 | 15% PEG 8000, 0.2M NaI, 0.1M MES, pH6.0 |