7EKF
Structure of SARS-CoV-2 Alpha variant spike receptor-binding domain complexed with human ACE2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-01-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 104.530, 104.530, 230.470 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 27.860 - 2.850 |
R-factor | 0.2089 |
Rwork | 0.208 |
R-free | 0.22380 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6lzg |
RMSD bond length | 0.005 |
RMSD bond angle | 0.695 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 28.120 | 2.920 |
High resolution limit [Å] | 2.850 | 2.850 |
Number of reflections | 30710 | 30617 |
<I/σ(I)> | 16.5 | |
Completeness [%] | 99.9 | |
Redundancy | 21.7 | |
CC(1/2) | 0.999 | 0.684 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291 | 0.1 M MES, pH 6.5, 10% w/v PEG 5000 MME, 12% v/v1-Propanol |