7EKA
crystal structure of epigallocatechin binding with alpha-lactalbumin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 90 |
Detector technology | PIXEL |
Collection date | 2020-05-21 |
Detector | PSI JUNGFRAU 16M |
Wavelength(s) | 0.9779 |
Spacegroup name | P 64 |
Unit cell lengths | 69.344, 69.344, 59.553 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 21.210 - 1.200 |
R-factor | 0.1686 |
Rwork | 0.168 |
R-free | 0.17630 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1alc |
RMSD bond length | 0.008 |
RMSD bond angle | 1.848 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 (3.27) |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.18.2_3874: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 1.400 |
High resolution limit [Å] | 1.200 | 3.660 | 1.370 |
Rmerge | 0.067 | 0.048 | 0.220 |
Rmeas | 0.071 | 0.051 | 0.235 |
Rpim | 0.023 | 0.016 | 0.081 |
Number of reflections | 50847 | 1852 | 1495 |
<I/σ(I)> | 11.5 | ||
Completeness [%] | 94.3 | 99.8 | 83.9 |
Redundancy | 9.6 | 9.9 | 8.2 |
CC(1/2) | 0.998 | 0.967 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 293 | 2000 mM ammonium sulfate, 100 mM sodium citrate buffer (pH 5.5) |