Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7EK0

Complex Structure of antibody BD-503 and RBD-N501Y of COVID-19

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17U1
Synchrotron siteSSRF
BeamlineBL17U1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-01-16
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9795
Spacegroup nameC 2 2 21
Unit cell lengths81.426, 149.665, 146.433
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.540 - 2.700
R-factor0.2182
Rwork0.214
R-free0.26600
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7bwj
Data scaling softwareSCALEPACK
Phasing softwarePHENIX
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.5402.800
High resolution limit [Å]2.7002.700
Rmerge0.232
Rmeas0.242
Rpim0.0670.341
Number of reflections236861595
<I/σ(I)>16.641.84
Completeness [%]94.7
Redundancy13.113.6
CC(1/2)0.9910.799
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2910.1M Sodium citrate, pH 5.5, 15% (w/v) PEG 6000

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon