7EJL

Complex Structure of HLA-A*2402 with the Peptide from HCoV(CoV-2) spike protein

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	SPRING-8 BEAMLINE BL26B2
Synchrotron site	SPring-8
Beamline	BL26B2
Temperature [K]	100
Detector technology	CCD
Collection date	2021-01-28
Detector	RAYONIX MX-225
Wavelength(s)	1.00
Spacegroup name	P 21 21 21
Unit cell lengths	67.717, 85.465, 91.373
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	45.690 - 1.890
R-factor	0.202
Rwork	0.200
R-free	0.25500
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	4f7m
RMSD bond length	0.007
RMSD bond angle	0.855
Data reduction software	XDS
Data scaling software	XDS
Phasing software	PHASER
Refinement software	PHENIX (1.13_2998)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	45.890	1.960
High resolution limit [Å]	1.890	1.890
Number of reflections	80351	7913
<I/σ(I)>	7.7
Completeness [%]	98.7
Redundancy	7.8
CC(1/2)	0.996	0.483

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	8.2	293	Na/K phosphate