7EI9
RNA kink-turn motif with pyrrolo cytosine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-11-14 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.98 |
Spacegroup name | P 42 21 2 |
Unit cell lengths | 76.416, 76.416, 41.197 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.260 - 2.700 |
R-factor | 0.229 |
Rwork | 0.227 |
R-free | 0.24600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4c40 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 36.260 | 36.260 | 2.800 |
High resolution limit [Å] | 2.700 | 5.000 | 2.700 |
Rmerge | 0.036 | 0.019 | 0.397 |
Rmeas | 0.041 | 0.022 | 0.451 |
Total number of observations | 15002 | ||
Number of reflections | 3622 | 620 | 365 |
<I/σ(I)> | 22.76 | 45 | 3.6 |
Completeness [%] | 99.3 | 97.9 | 100 |
Redundancy | 4.142 | 3.737 | 4.43 |
CC(1/2) | 1.000 | 1.000 | 0.904 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | sodium cacodylate, MPD, spermine tetrahydrochloride, strontium chloride |