7E9J
Crystal Structure of POMGNT2 in complex with UDP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0718 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 96.129, 106.233, 132.359 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.300 - 2.400 |
R-factor | 0.2065 |
Rwork | 0.205 |
R-free | 0.23790 |
Structure solution method | SAD |
RMSD bond length | 0.003 |
RMSD bond angle | 0.626 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.300 | 2.486 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.247 | 1.858 |
Rpim | 0.070 | 0.518 |
Number of reflections | 56436 | 5292 |
<I/σ(I)> | 10.5 | |
Completeness [%] | 100.0 | |
Redundancy | 13.4 | |
CC(1/2) | 0.997 | 0.442 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 0.1 M Tris-HCl (pH 8.0 or 8.5), 12-16 % PEG 8000, 1 % tacsimate (pH 7.0) |