7E46
Structure of the CYP102A1 Haem Domain with N-Carboxybenzyl-L-Prolyl-L-Phenylalanine in complex with (S)-(-)-1-Phenylethylamine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B1 |
Synchrotron site | SPring-8 |
Beamline | BL26B1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-25 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 58.855, 128.428, 148.810 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.610 - 1.910 |
R-factor | 0.2347 |
Rwork | 0.233 |
R-free | 0.27050 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5xa3 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.623 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | MOLREP (11.7.02) |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.610 | 48.610 | 1.940 |
High resolution limit [Å] | 1.910 | 10.290 | 1.910 |
Rmerge | 0.203 | 0.051 | 2.228 |
Rmeas | 0.212 | 0.053 | 2.336 |
Rpim | 0.060 | 0.016 | 0.684 |
Number of reflections | 88352 | 671 | 4448 |
<I/σ(I)> | 9.8 | 30.7 | 1.4 |
Completeness [%] | 100.0 | 98.9 | 100 |
Redundancy | 12.3 | 10.4 | 11.1 |
CC(1/2) | 0.998 | 0.999 | 0.508 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 293 | PEG 8000, Magnesium Chloride, Tris-HCl, 0.5 % DMSO, 200 uM N-Carboxybenzyl-L-Prolyl-L-Phenylalanine, 1 mM (S)-(-)-1-Phenylethylamine |