7E16
crystal structure of GDSL esterase from Geobacillus thermodenitrificans
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 80 |
Detector technology | CCD |
Collection date | 2020-01-02 |
Detector | MAR CCD 130 mm |
Wavelength(s) | 0.97 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 106.424, 106.424, 128.643 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 32.500 - 2.620 |
R-factor | 0.2464 |
Rwork | 0.245 |
R-free | 0.27830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1u8u |
RMSD bond length | 0.009 |
RMSD bond angle | 1.348 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.640 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmeas | 0.118 | |
Rpim | 0.024 | 0.227 |
Number of reflections | 22907 | 1126 |
<I/σ(I)> | 1.9 | 1.5 |
Completeness [%] | 99.2 | |
Redundancy | 20 | |
CC(1/2) | 0.968 | 0.933 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | PEG 3350 |