Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7DZ3

Crystal structures of D-allulose 3-epimerase with D-fructose from Sinorhizobium fredii

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE AR-NE3A
Synchrotron sitePhoton Factory
BeamlineAR-NE3A
Temperature [K]95
Detector technologyPIXEL
Collection date2019-12-07
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)1.0000
Spacegroup nameP 21 21 21
Unit cell lengths87.437, 120.648, 134.633
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.920 - 1.880
R-factor0.1838
Rwork0.182
R-free0.21840
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5zfs
RMSD bond length0.011
RMSD bond angle1.115
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.7801.910
High resolution limit [Å]1.8801.880
Rmeas0.123
Rpim0.0460.481
Number of reflections1160875634
<I/σ(I)>10.32
Completeness [%]99.3
Redundancy6.9
CC(1/2)0.9980.716
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2930.2 M Lithium sulfate monohydrate, 0.1 M BIS-TRIS pH 6.5, 25% w/v PEG 3,350

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon