7DZ3
Crystal structures of D-allulose 3-epimerase with D-fructose from Sinorhizobium fredii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2019-12-07 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 87.437, 120.648, 134.633 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.920 - 1.880 |
R-factor | 0.1838 |
Rwork | 0.182 |
R-free | 0.21840 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5zfs |
RMSD bond length | 0.011 |
RMSD bond angle | 1.115 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.780 | 1.910 |
High resolution limit [Å] | 1.880 | 1.880 |
Rmeas | 0.123 | |
Rpim | 0.046 | 0.481 |
Number of reflections | 116087 | 5634 |
<I/σ(I)> | 10.3 | 2 |
Completeness [%] | 99.3 | |
Redundancy | 6.9 | |
CC(1/2) | 0.998 | 0.716 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2 M Lithium sulfate monohydrate, 0.1 M BIS-TRIS pH 6.5, 25% w/v PEG 3,350 |