7DU5
The structure of the M.tb MazF-mt1 toxin in complex with a fragment of cognate antitoxin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-20 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 83.271, 83.271, 141.265 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 41.640 - 2.650 |
R-factor | 0.2554 |
Rwork | 0.254 |
R-free | 0.28040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6kyt |
RMSD bond length | 0.006 |
RMSD bond angle | 1.096 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.640 | 2.780 |
High resolution limit [Å] | 2.650 | 2.650 |
Rmerge | 0.060 | 0.550 |
Number of reflections | 8929 | 1158 |
<I/σ(I)> | 30.5 | 6.5 |
Completeness [%] | 99.8 | 99.6 |
Redundancy | 18.8 | 20.1 |
CC(1/2) | 0.999 | 0.990 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 298 | 20% PEG 3350, 0.1 M NaOAc pH 5.0, 0.1 M NaCl |