7DRO
Structure of ATP-grasp ligase PsnB complexed with minimal precursor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-07-02 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.97934 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 86.894, 146.944, 167.834 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.040 - 3.250 |
R-factor | 0.2558 |
Rwork | 0.256 |
R-free | 0.26290 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ig9 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.040 | 47.040 | 3.310 |
High resolution limit [Å] | 3.250 | 8.810 | 3.250 |
Rmerge | 0.155 | 0.107 | 0.594 |
Rmeas | 0.161 | 0.111 | 0.615 |
Rpim | 0.042 | 0.031 | 0.159 |
Number of reflections | 34587 | 1899 | 1692 |
<I/σ(I)> | 8.9 | ||
Completeness [%] | 100.0 | 100 | 100 |
Redundancy | 14.6 | 12.8 | 14.8 |
CC(1/2) | 0.978 | 0.946 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.6 | 293 | Tacsimate, PEG3350 |