7DM5
The structure of the Arabidopsis thaliana guanosine deaminase in reaction with guanosine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-05-12 |
Detector | OXFORD ONYX CCD |
Wavelength(s) | 1.54 |
Spacegroup name | P 61 |
Unit cell lengths | 118.566, 118.566, 39.405 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 23.560 - 2.200 |
R-factor | 0.17 |
Rwork | 0.167 |
R-free | 0.22200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7dbf |
RMSD bond length | 0.003 |
RMSD bond angle | 0.548 |
Data reduction software | CrysalisPro |
Data scaling software | CrysalisPro |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 23.560 | 2.320 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.110 | 0.320 |
Number of reflections | 16363 | 2364 |
<I/σ(I)> | 15.1 | 5.9 |
Completeness [%] | 99.9 | 100 |
Redundancy | 6.9 | 7.1 |
CC(1/2) | 0.996 | 0.944 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 1.2 M Na-citrate and 0.1 M HEPES (pH 7.5) |