7DHX
Crystal structure of SARS-CoV-2 RBD binding to pangolin ACE2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-05-23 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97918 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 139.996, 97.564, 90.982 |
Unit cell angles | 90.00, 129.15, 90.00 |
Refinement procedure
Resolution | 33.930 - 2.300 |
R-factor | 0.1962 |
Rwork | 0.194 |
R-free | 0.23490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6lzg |
RMSD bond length | 0.003 |
RMSD bond angle | 0.563 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.380 |
High resolution limit [Å] | 2.300 | 2.300 |
Number of reflections | 41945 | 39596 |
<I/σ(I)> | 51.4 | |
Completeness [%] | 99.2 | |
Redundancy | 6.8 | |
CC(1/2) | 0.824 | 0.832 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.05M potassium phosphate, 20% w/v Polyethylene glycol 8000 |