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7DC5

Crystal structure of fungal antifreeze protein with intermediate activity

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-1A
Synchrotron sitePhoton Factory
BeamlineBL-1A
Temperature [K]95
Detector technologyPIXEL
Collection date2019-03-17
DetectorDECTRIS EIGER2 X 4M
Wavelength(s)1.1
Spacegroup nameP 21 21 21
Unit cell lengths57.122, 62.991, 101.210
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.800 - 1.540
R-factor0.1963
Rwork0.195
R-free0.22870
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5b5h
RMSD bond length0.013
RMSD bond angle1.709
Data reduction softwareXDS
Data scaling softwareAimless (0.7.3)
Phasing softwarePHASER (2.8.2)
Refinement softwareREFMAC (5.8.0253)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]49.80049.8001.570
High resolution limit [Å]1.5408.4301.540
Rmerge0.1310.0591.167
Rmeas0.1360.0621.215
Rpim0.0380.0200.336
Number of reflections546713802620
<I/σ(I)>12.3
Completeness [%]99.894.399.1
Redundancy12.69.713.1
CC(1/2)0.9980.9970.941
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.52930.1M MES pH6.5, 30% (w/v) PEG MME 5000, 0.2M ammonium sulfate

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PDB entries from 2024-05-15

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