7DC5
Crystal structure of fungal antifreeze protein with intermediate activity
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2019-03-17 |
Detector | DECTRIS EIGER2 X 4M |
Wavelength(s) | 1.1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 57.122, 62.991, 101.210 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.800 - 1.540 |
R-factor | 0.1963 |
Rwork | 0.195 |
R-free | 0.22870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5b5h |
RMSD bond length | 0.013 |
RMSD bond angle | 1.709 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.800 | 49.800 | 1.570 |
High resolution limit [Å] | 1.540 | 8.430 | 1.540 |
Rmerge | 0.131 | 0.059 | 1.167 |
Rmeas | 0.136 | 0.062 | 1.215 |
Rpim | 0.038 | 0.020 | 0.336 |
Number of reflections | 54671 | 380 | 2620 |
<I/σ(I)> | 12.3 | ||
Completeness [%] | 99.8 | 94.3 | 99.1 |
Redundancy | 12.6 | 9.7 | 13.1 |
CC(1/2) | 0.998 | 0.997 | 0.941 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 0.1M MES pH6.5, 30% (w/v) PEG MME 5000, 0.2M ammonium sulfate |