7D9L
Crystal structure of E. coli Grx2: Enzyme inhibited state in complex with Zinc and glutathione sulfinic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-16 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.984 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 46.095, 106.758, 42.130 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.319 - 1.610 |
R-factor | 0.1329 |
Rwork | 0.130 |
R-free | 0.18230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4kx4 |
RMSD bond length | 0.016 |
RMSD bond angle | 1.853 |
Data reduction software | XDS (Jan 31, 2020 (BUILT 20200131)) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.350 | 1.628 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.191 | 1.207 |
Rmeas | 0.208 | 1.320 |
Rpim | 0.082 | 0.525 |
Number of reflections | 28045 | 1401 |
<I/σ(I)> | 11.7 | |
Completeness [%] | 99.3 | 99.4 |
Redundancy | 6.3 | 6.2 |
CC(1/2) | 0.995 | 0.555 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 25mg/ml in 25mM Tris pH 8.0, 150 mM NaCl, 20 mM GSH, 10 mM DHA 0.01M Zinc sulfate heptahydrate, 0.1M MES monohydrate pH6.5, 25%v/v Polyethylene glycol monomethyl ether 550, Protein and reservoir mixed in 1:1, 1:2 and 2:1 ratio, set up using MRC Swissci 3 well plates with drop size 150 nl. |