7D83
Crystal structure of HIV-1 integrase catalytic core domain in complex with 2-(tert-butoxy)-2-(2-(3-cyclohexylureido)-3,6-dimethyl-5-(5-methylchroman-6-yl)pyridin-4-yl)acetic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2013-04-05 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 72.312, 72.312, 65.845 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 62.620 - 2.430 |
R-factor | 0.2263 |
Rwork | 0.224 |
R-free | 0.27790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6lmq |
RMSD bond length | 0.008 |
RMSD bond angle | 1.043 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.5.0102) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 62.620 | 50.000 | 2.470 |
High resolution limit [Å] | 2.430 | 6.590 | 2.430 |
Rmerge | 0.083 | 0.044 | 0.560 |
Number of reflections | 7819 | 432 | 366 |
<I/σ(I)> | 10.8 | ||
Completeness [%] | 99.8 | 98.6 | 96.8 |
Redundancy | 6.5 | 6 | 5.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293.15 | 0.1M Sodium cacodylate pH 6.5, 0.2M Ammonium sulfate, 1% PEG 8000, 5mM DTT |