Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7D81

Crystal Structure of the Domain2 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyPIXEL
Collection date2019-11-09
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.97853
Spacegroup nameP 32 2 1
Unit cell lengths76.026, 76.026, 50.468
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution30.364 - 2.100
R-factor0.2259
Rwork0.224
R-free0.25070
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7d7v
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHASER
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.180
High resolution limit [Å]2.1004.5202.100
Rmerge0.0810.0461.132
Rmeas0.0830.0481.167
Rpim0.0190.0110.281
Total number of observations191116
Number of reflections101151085995
<I/σ(I)>5.4
Completeness [%]100.099.9100
Redundancy18.91816.2
CC(1/2)0.9990.875
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2890.2 M NaCl 0.1 M CHES pH 9.5, 50% PEG400

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon