7D7K
The crystal structure of SARS-CoV-2 papain-like protease in apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-26 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 115.999, 115.999, 254.193 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.280 - 1.900 |
R-factor | 0.1835 |
Rwork | 0.183 |
R-free | 0.20740 |
Structure solution method | SAD |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.280 | 49.280 | 1.950 |
High resolution limit [Å] | 1.900 | 8.480 | 1.900 |
Rmerge | 0.128 | 0.028 | 3.853 |
Rmeas | 0.130 | 0.028 | 3.901 |
Total number of observations | 3132886 | ||
Number of reflections | 79593 | 1009 | 5697 |
<I/σ(I)> | 25.84 | 104.42 | 1.66 |
Completeness [%] | 98.8 | 93.6 | 97.7 |
Redundancy | 39.361 | 30.239 | 40.079 |
CC(1/2) | 1.000 | 1.000 | 0.683 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 8 | 293 | 0.1M Tris pH 8.0, 2.0M Ammonium sulfate, 0.033% w/v Caffeine, 0.033% w/v Dithioerythritol, 0.033% w/v L-Methionine |