Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7D5D

Left-handed G-quadruplex containing one bulge

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 2
Synchrotron siteSOLEIL
BeamlinePROXIMA 2
Temperature [K]100
Detector technologyPIXEL
Collection date2017-09-10
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.9793
Spacegroup nameP 1 21 1
Unit cell lengths29.215, 40.037, 30.376
Unit cell angles90.00, 115.87, 90.00
Refinement procedure
Resolution27.330 - 1.180
R-factor0.1212
Rwork0.119
R-free0.16790
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4u5m
RMSD bond length0.015
RMSD bond angle1.979
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]27.3301.224
High resolution limit [Å]1.1801.182
Rmerge0.1250.938
Rmeas0.1351.028
Rpim0.0520.415
Number of reflections207472060
<I/σ(I)>9
Completeness [%]99.7
Redundancy6.7
CC(1/2)0.9960.500
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP62970.04 M sodium cacodylate trihydrate pH 6.0, 55% v/v -2-methyl-2,4-pentanediol and 0.012 M spermine tetrahydrochloride

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon