7D4E
Structure of L-lysine oxidase precursor in complex with L-lysine (1.0 M)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SPRING-8 BEAMLINE BL41XU |
| Synchrotron site | SPring-8 |
| Beamline | BL41XU |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2017-10-26 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 1.000 |
| Spacegroup name | C 2 2 21 |
| Unit cell lengths | 94.889, 130.050, 94.250 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 65.025 - 1.850 |
| R-factor | 0.1669 |
| Rwork | 0.165 |
| R-free | 0.20530 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3x0v |
| RMSD bond length | 0.019 |
| RMSD bond angle | 1.631 |
| Data reduction software | MOSFLM |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | PHENIX ((1.15.2_3472: ???)) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 76.700 | 1.890 |
| High resolution limit [Å] | 1.850 | 1.850 |
| Rmerge | 0.048 | 0.322 |
| Rpim | 0.028 | 0.186 |
| Number of reflections | 49629 | 3015 |
| <I/σ(I)> | 16.9 | 4 |
| Completeness [%] | 99.3 | 99 |
| Redundancy | 4.4 | 4.5 |
| CC(1/2) | 0.999 | 0.902 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 0.1 M Tris-HCl pH8.0 (-9.0) and 2.1 M ammonium dihydrogen phosphate |






