7D4E
Structure of L-lysine oxidase precursor in complex with L-lysine (1.0 M)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-26 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.000 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 94.889, 130.050, 94.250 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 65.025 - 1.850 |
R-factor | 0.1669 |
Rwork | 0.165 |
R-free | 0.20530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3x0v |
RMSD bond length | 0.019 |
RMSD bond angle | 1.631 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.15.2_3472: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 76.700 | 1.890 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.048 | 0.322 |
Rpim | 0.028 | 0.186 |
Number of reflections | 49629 | 3015 |
<I/σ(I)> | 16.9 | 4 |
Completeness [%] | 99.3 | 99 |
Redundancy | 4.4 | 4.5 |
CC(1/2) | 0.999 | 0.902 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 0.1 M Tris-HCl pH8.0 (-9.0) and 2.1 M ammonium dihydrogen phosphate |