7CTD
Crystal structure of apo form of alpha-glucuronidase (TM0752) from Thermotoga maritima
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | BRUKER AXS MICROSTAR |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2014-06-02 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.5418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 72.690, 80.950, 88.380 |
Unit cell angles | 90.00, 103.44, 90.00 |
Refinement procedure
Resolution | 29.466 - 2.150 |
R-factor | 0.1808 |
Rwork | 0.178 |
R-free | 0.22530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6kcx |
Data reduction software | MOSFLM (7.1) |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER |
Refinement software | PHENIX (1.16-3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.466 | 30.300 | 2.270 |
High resolution limit [Å] | 2.150 | 6.800 | 2.150 |
Rmerge | 0.169 | 0.029 | 0.899 |
Rmeas | 0.183 | 0.031 | 0.977 |
Rpim | 0.070 | 0.012 | 0.376 |
Number of reflections | 27091 | 873 | 3974 |
<I/σ(I)> | 8.7 | 28.8 | 0.9 |
Completeness [%] | 99.7 | 98.8 | 100 |
Redundancy | 6.7 | 6.7 | 6.6 |
CC(1/2) | 0.994 | 0.999 | 0.581 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.8 | 293 | 14 % PEG 3350, 0.2 M trilithium citrate, 0.1 M imidazole with pH 5.8, 2-propanol |