7CPK
Xylanase R from Bacillus sp. TAR-1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B1 |
Synchrotron site | SPring-8 |
Beamline | BL26B1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-02-02 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 52.920, 56.240, 126.650 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.870 - 1.600 |
R-factor | 0.1453 |
Rwork | 0.143 |
R-free | 0.19010 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2uwf |
RMSD bond length | 0.005 |
RMSD bond angle | 0.785 |
Data reduction software | XDS (ver. Jan 31, 2020) |
Data scaling software | XDS (ver. Jan 31, 2020) |
Phasing software | MOLREP (ver. 11.7.01) |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 36.870 | 1.690 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.052 | 0.412 |
Rmeas | 0.056 | 0.454 |
Number of reflections | 49937 | 7146 |
<I/σ(I)> | 21.09 | 3.23 |
Completeness [%] | 98.0 | |
Redundancy | 7.07 | |
CC(1/2) | 0.999 | 0.894 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.4 | 293 | 20mM calcium chloride, 100mM sodium acetate, 30% v/v 2-methyl-2,4-pentanediol |