7C0Z
Crystal structure of a dinucleotide-binding protein (Y246A) of ABC transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (Form II)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2019-07-14 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 58.800, 104.390, 65.740 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 65.740 - 2.200 |
R-factor | 0.1903 |
Rwork | 0.188 |
R-free | 0.23780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7c0f |
RMSD bond length | 0.013 |
RMSD bond angle | 2.030 |
Data reduction software | MOSFLM (7.2.2) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 65.740 | 65.740 | 2.270 |
High resolution limit [Å] | 2.200 | 9.070 | 2.200 |
Rmerge | 0.174 | 0.122 | 0.511 |
Rmeas | 0.197 | 0.138 | 0.585 |
Rpim | 0.091 | 0.064 | 0.282 |
Total number of observations | 172451 | 2565 | 13680 |
Number of reflections | 39359 | 607 | 3320 |
<I/σ(I)> | 7.1 | 12.1 | 2.9 |
Completeness [%] | 97.9 | 99.7 | 95.9 |
Redundancy | 4.4 | 4.2 | 4.1 |
CC(1/2) | 0.978 | 0.982 | 0.778 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 6.5 | 277 | 0.2M ammonium phosphate, 0.1M sodium cacodylate pH 6.5, 30% PEG 8000 |