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7C0Z

Crystal structure of a dinucleotide-binding protein (Y246A) of ABC transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (Form II)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2019-07-14
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.5418
Spacegroup nameP 1 21 1
Unit cell lengths58.800, 104.390, 65.740
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution65.740 - 2.200
R-factor0.1903
Rwork0.188
R-free0.23780
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7c0f
RMSD bond length0.013
RMSD bond angle2.030
Data reduction softwareMOSFLM (7.2.2)
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER (2.8.3)
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]65.74065.7402.270
High resolution limit [Å]2.2009.0702.200
Rmerge0.1740.1220.511
Rmeas0.1970.1380.585
Rpim0.0910.0640.282
Total number of observations172451256513680
Number of reflections393596073320
<I/σ(I)>7.112.12.9
Completeness [%]97.999.795.9
Redundancy4.44.24.1
CC(1/2)0.9780.9820.778
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH6.52770.2M ammonium phosphate, 0.1M sodium cacodylate pH 6.5, 30% PEG 8000

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PDB entries from 2024-05-15

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