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7C0Y

Crystal structure of a dinucleotide-binding protein (Y246A) of ABC transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (Form I)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2019-07-15
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.5418
Spacegroup nameP 1 21 1
Unit cell lengths65.080, 58.520, 102.640
Unit cell angles90.00, 92.75, 90.00
Refinement procedure
Resolution56.190 - 1.700
R-factor0.1786
Rwork0.177
R-free0.21440
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7c0f
RMSD bond length0.015
RMSD bond angle1.971
Data reduction softwareMOSFLM (7.2.2)
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER (2.8.3)
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]56.19056.1301.730
High resolution limit [Å]1.7009.0001.700
Rmerge0.1100.1150.332
Rmeas0.1230.1300.379
Rpim0.0550.0580.179
Total number of observations267418135
Number of reflections830066224230
<I/σ(I)>8.7123.7
Completeness [%]97.699.394.6
Redundancy4.54.34.3
CC(1/2)0.9910.9770.888
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH6.52770.2M ammonium phosphate, 0.1M sodium cacodylate pH 6.5, 30% PEG 8000

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PDB entries from 2024-05-15

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