7C0Y
Crystal structure of a dinucleotide-binding protein (Y246A) of ABC transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (Form I)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2019-07-15 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 65.080, 58.520, 102.640 |
Unit cell angles | 90.00, 92.75, 90.00 |
Refinement procedure
Resolution | 56.190 - 1.700 |
R-factor | 0.1786 |
Rwork | 0.177 |
R-free | 0.21440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7c0f |
RMSD bond length | 0.015 |
RMSD bond angle | 1.971 |
Data reduction software | MOSFLM (7.2.2) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 56.190 | 56.130 | 1.730 |
High resolution limit [Å] | 1.700 | 9.000 | 1.700 |
Rmerge | 0.110 | 0.115 | 0.332 |
Rmeas | 0.123 | 0.130 | 0.379 |
Rpim | 0.055 | 0.058 | 0.179 |
Total number of observations | 2674 | 18135 | |
Number of reflections | 83006 | 622 | 4230 |
<I/σ(I)> | 8.7 | 12 | 3.7 |
Completeness [%] | 97.6 | 99.3 | 94.6 |
Redundancy | 4.5 | 4.3 | 4.3 |
CC(1/2) | 0.991 | 0.977 | 0.888 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 6.5 | 277 | 0.2M ammonium phosphate, 0.1M sodium cacodylate pH 6.5, 30% PEG 8000 |