7C0S
Crystal structure of a dinucleotide-binding protein (F79A) of ABC transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (Form II)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2019-01-06 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 66.539, 58.360, 123.820 |
Unit cell angles | 90.00, 94.81, 90.00 |
Refinement procedure
Resolution | 60.560 - 1.850 |
R-factor | 0.2065 |
Rwork | 0.205 |
R-free | 0.23980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7c0f |
RMSD bond length | 0.015 |
RMSD bond angle | 1.997 |
Data reduction software | MOSFLM (7.2.2) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 60.560 | 60.560 | 1.890 |
High resolution limit [Å] | 1.850 | 9.250 | 1.850 |
Rmerge | 0.082 | 0.040 | 0.561 |
Rmeas | 0.093 | 0.045 | 0.636 |
Rpim | 0.043 | 0.020 | 0.293 |
Total number of observations | 318743 | 3068 | 17472 |
Number of reflections | 74626 | 704 | 4010 |
<I/σ(I)> | 12.2 | 27.5 | 2.5 |
Completeness [%] | 92.0 | 99.4 | 83.6 |
Redundancy | 4.3 | 4.4 | 4.4 |
CC(1/2) | 0.995 | 0.998 | 0.772 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 6.5 | 277 | 0.2M ammonium phosphate, 0.1M sodium cacodylate pH6.5, 30% PEG 8000 |