7BZ4
The mutant variant of PNGM-1. H279 was substituted for alanine to study metal coordination.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-05-08 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97940 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 121.857, 82.964, 164.037 |
Unit cell angles | 90.00, 110.94, 90.00 |
Refinement procedure
Resolution | 48.080 - 2.160 |
R-factor | 0.1961 |
Rwork | 0.193 |
R-free | 0.24900 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.699 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | HKL-3000 |
Refinement software | REFMAC (5.8.0257) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.200 |
High resolution limit [Å] | 2.160 | 5.860 | 2.160 |
Rmerge | 0.165 | 0.086 | 0.437 |
Rmeas | 0.183 | 0.094 | 0.500 |
Rpim | 0.076 | 0.036 | 0.237 |
Number of reflections | 79596 | 4095 | 3862 |
<I/σ(I)> | 4.8 | ||
Completeness [%] | 96.8 | 96.4 | 95.2 |
Redundancy | 5 | 6.4 | 3.7 |
CC(1/2) | 0.977 | 0.992 | 0.715 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 7.5 | 287 | 0.05 M HEPES, 0.15 M Magnesium Acetate, 0.2 M Ammonium Acetate and 10% PEG 4000 |