7BYU
Crystal structure of Acidovorax avenae L-fucose mutarotase (apo form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | P 31 |
Unit cell lengths | 69.465, 69.465, 69.200 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.415 - 2.206 |
R-factor | 0.2181 |
Rwork | 0.217 |
R-free | 0.23980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1x8d |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.270 |
High resolution limit [Å] | 2.200 | 2.210 |
Rmeas | 0.085 | 0.843 |
Rpim | 0.037 | 0.372 |
Number of reflections | 18794 | 1637 |
<I/σ(I)> | 10.6 | 1.8 |
Completeness [%] | 99.7 | 98 |
Redundancy | 5.2 | 2.58 |
CC(1/2) | 0.996 | 0.756 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.8 M potassium sodium tartrate, 0.1 M Tris-HCl pH 8.5, 0.5% PEGMME 5000 |