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7BYA

Malate Dehydrogenase from Geobacillus stearothermophilus (gs-MDH) complexed with Oxaloacetic Acid (OAA) and Adenosine 5'-Diphosphoribose (APR)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSPRING-8 BEAMLINE BL26B1
Synchrotron siteSPring-8
BeamlineBL26B1
Temperature [K]100
Detector technologyPIXEL
Collection date2019-05-21
DetectorDECTRIS EIGER X 4M
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths83.327, 103.220, 150.790
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.159 - 2.200
Rwork0.180
R-free0.22990
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7by8
RMSD bond length0.007
RMSD bond angle1.469
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.1602.250
High resolution limit [Å]2.2002.200
Rmerge0.1110.441
Number of reflections667764459
<I/σ(I)>21.88.1
Completeness [%]100.0
Redundancy27.6
CC(1/2)0.9990.990
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2930.1 M Tris-HCl (pH 7.0), 16 % PEG 2000 MME, 2 mM OAA, and 2 mM NAD+

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