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7BWP

Crystal complex of endo-deglycosylated PcHNL5 with (R)-mandelonitrile

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyCCD
Collection date2018-06-22
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9789
Spacegroup nameP 21 21 21
Unit cell lengths49.544, 91.095, 130.192
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.305 - 1.802
R-factor0.1617
Rwork0.160
R-free0.19680
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6jby
RMSD bond length0.006
RMSD bond angle0.863
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.12_2829)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0001.830
High resolution limit [Å]1.8001.800
Rmeas0.057
Number of reflections552362751
<I/σ(I)>34.316.6
Completeness [%]99.8
Redundancy12.6
CC(1/2)0.9960.978
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.25289tris-bicine, 100 mM, pH 8.25; CaCl2, 60 mM; MgCl2, 60 mM; PEG 500MME, 24%, v/v; PEG 20000, 12%, w/v

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