7BWP
Crystal complex of endo-deglycosylated PcHNL5 with (R)-mandelonitrile
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-06-22 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9789 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 49.544, 91.095, 130.192 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.305 - 1.802 |
R-factor | 0.1617 |
Rwork | 0.160 |
R-free | 0.19680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6jby |
RMSD bond length | 0.006 |
RMSD bond angle | 0.863 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.830 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmeas | 0.057 | |
Number of reflections | 55236 | 2751 |
<I/σ(I)> | 34.3 | 16.6 |
Completeness [%] | 99.8 | |
Redundancy | 12.6 | |
CC(1/2) | 0.996 | 0.978 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.25 | 289 | tris-bicine, 100 mM, pH 8.25; CaCl2, 60 mM; MgCl2, 60 mM; PEG 500MME, 24%, v/v; PEG 20000, 12%, w/v |