7BSG
Crystal structure of a NIR-emitting DNA-stabilized Ag16 nanocluster (T5G mutant)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-04 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.98 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 29.882, 33.677, 76.750 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 22.350 - 2.190 |
R-factor | 0.2116 |
Rwork | 0.208 |
R-free | 0.24660 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6jr4 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 22.350 | 22.350 | 2.250 |
High resolution limit [Å] | 2.190 | 9.810 | 2.190 |
Rmerge | 0.130 | 0.061 | 0.319 |
Rmeas | 0.158 | 0.073 | 0.402 |
Total number of observations | 11879 | ||
Number of reflections | 3775 | 40 | 300 |
<I/σ(I)> | 5.47 | 13.91 | 2.55 |
Completeness [%] | 98.2 | 93 | 98.4 |
Redundancy | 3.147 | 3.15 | 2.697 |
CC(1/2) | 0.995 | 0.994 | 0.908 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 296 | MOPS, Spermine, calcium nitrate, PEG |