7BQW
Crystal structure of Methionine gamma-lyase from Fusobacterium nucleatum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-01-09 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9789 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 95.205, 95.205, 302.253 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.750 - 2.500 |
R-factor | 0.2172 |
Rwork | 0.214 |
R-free | 0.27780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5dx5 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.942 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.590 |
High resolution limit [Å] | 2.500 | 2.500 |
Number of reflections | 56011 | 55899 |
<I/σ(I)> | 23.77 | |
Completeness [%] | 99.8 | |
Redundancy | 3.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 20% PEG 5000, 0.2M sodium formate, 0.1M BICINE pH 8.5 |